AI Enzyme engineering

Optimize activity, expression, and thermostability in the same enzyme optimization campaign.

Balance multi-property optimization for every property you can measure with Cradle — trained on your own assay data. Reach a variant that meets your requirements in fewer rounds.

Every enzyme engineer knows the pattern.

Your best Round 4 variant has 3× activity — and 40% lower expression. Your +15°C Tm hit doesn't tolerate process pH. The two best single mutants combined perform worse than either parent. And your assay drifted between batches, so half your data is noise.

Directed evolution optimizes one property per round. Rational design from a crystal structure misses the distant positions that drive real-world performance. Combining single winners ignores epistasis. None of these approaches survive the jump from bench assay to bioreactor.

Cradle was built for teams past the screening hit. Our job is to get you to a variant that holds up.

Enzyme discovery before

Project design

Target ID

Variant generation

Variant generation

Optimization

Optimization

Application testing

Lead Op

Scale up

Scale up

Enzyme discovery with Cradle

Project design

Target ID

AI protein engineering

AI Protein Engineering

Scale up

Preclinical

Move faster from screening hit to scalable enzyme.

Fewer rounds

Stop running dozen-round directed evolution campaigns

Cradle is built to handle the realities of the lab—like assay noise and batch-to-batch variation—that usually stall engineering. Scientists reach target profiles 2-12x faster using as little as one 96-well plate of data. You get to the "winner" faster while spending less on synthesis and screening.

Better enzymes

Optimize for activity, stability, and expression in parallel

Stop choosing between a high-performer that won’t express and a stable lead with no activity. Cradle balances these trade-offs from round one, finding non-intuitive mutations that traditional rational design misses. You get a diverse set of sequences that aren't just "hits" in an assay, but viable candidates for production.

Built for biologists

An intuitive workbench for any enzyme class

Your team can run campaigns directly through a UI that combines 3D structural views with sequence insights—no coding or data science degree required. Whether you’re engineering P450s or polymerases, you maintain full control of the strategy. Most importantly: your sequences and models remain your exclusive IP.

Fewer rounds

Stop running dozen-round directed evolution campaigns

Cradle is built to handle the realities of the lab—like assay noise and batch-to-batch variation—that usually stall engineering. Scientists reach target profiles 2-12x faster using as little as one 96-well plate of data. You get to the "winner" faster while spending less on synthesis and screening.

Better enzymes

Optimize for activity, stability, and expression in parallel

Stop choosing between a high-performer that won’t express and a stable lead with no activity. Cradle balances these trade-offs from round one, finding non-intuitive mutations that traditional rational design misses. You get a diverse set of sequences that aren't just "hits" in an assay, but viable candidates for production.

Built for biologists

An intuitive workbench for any enzyme class

Your team can run campaigns directly through a UI that combines 3D structural views with sequence insights—no coding or data science degree required. Whether you’re engineering P450s or polymerases, you maintain full control of the strategy. Most importantly: your sequences and models remain your exclusive IP.

Supported properties

Supported properties

If you can measure it, you can optimize it with Cradle.

If you can measure it, you can optimize it with Cradle.

Set multiple objectives and let Cradle find variants that balance them - starting from as few as 96 variants per round.

Set multiple objectives and let Cradle find variants that balance them - starting from as few as 96 variants per round.

Activity

Catalytic turnover, kcat, specific activity, substrate conversion

Stability

Thermostability (Tm), pH tolerance, solvent tolerance, shelf life

Selectivity

Product selectivity, substrate specificity, enantioselectivity

Application-specific

Fermentation robustness, formulation compatibility

Better enzymes.
Built for your process.

Talk to the Cradle team.

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© 2026 · Cradle is a registered trademark

Built with ❤️ in Amsterdam & Zurich

© 2026 · Cradle is a registered trademark

Built with ❤️ in Amsterdam & Zurich